PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10020726m
Common NameCARUB_v10020726mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 297aa    MW: 33146.1 Da    PI: 7.2856
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10020726mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.71.1e-28145204159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dgy+WrKYGqK+ ++++ pr+Y++C+ a +C+vkkkv+rs ed++v++ tYegeHnh+
  Carubv10020726m 145 VKDGYQWRKYGQKVTRDNPSPRAYFKCACApSCSVKKKVQRSVEDQSVLVATYEGEHNHP 204
                      58**************************999****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081126.773140206IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-27141206IPR003657WRKY domain
SuperFamilySSF1182901.31E-24141206IPR003657WRKY domain
SMARTSM007742.7E-31145205IPR003657WRKY domain
PfamPF031063.7E-23146204IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0002238Biological Processresponse to molecule of fungal origin
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009623Biological Processresponse to parasitic fungus
GO:0009651Biological Processresponse to salt stress
GO:0009685Biological Processgibberellin metabolic process
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050691Biological Processregulation of defense response to virus by host
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MDQYSSSLVD TSLDLTIGVT RMRVEEDPPT NALVEELNRV SAENKKLSEM LTLMYNNYNI  60
LKKQLVEYEN KSNITERDQI SPPKKRKSPA RDDAFSSAVI GGVSESSSTD QDEYLCKKQR  120
EETVVKEKVS RVYYKTEASD TTLVVKDGYQ WRKYGQKVTR DNPSPRAYFK CACAPSCSVK  180
KKVQRSVEDQ SVLVATYEGE HNHPMPSQID SNNSLNRYIS LGGSPTAANR STAPLTTVDQ  240
TESKKVTSPT SRIDFPEVQK LLVEQMASSL TKDPNFTAAL AAAVTGRLYQ QNQTEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-201442071678Probable WRKY transcription factor 4
2lex_A1e-201442071678Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00251DAPTransfer from AT1G80840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935420.0AB493542.1 Arabidopsis thaliana At1g80840 mRNA for hypothetical protein, partial cds, clone: RAAt1g80840.
GenBankAF4801490.0AF480149.1 Arabidopsis thaliana WRKY transcription factor 40 (WRKY40) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006302620.10.0hypothetical protein CARUB_v10020726mg
SwissprotQ9SAH70.0WRK40_ARATH; Probable WRKY transcription factor 40
TrEMBLR0IFJ70.0R0IFJ7_9BRAS; Uncharacterized protein
STRINGfgenesh2_kg.2__2291__AT1G80840.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24772872
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.10.0WRKY DNA-binding protein 40